Summary: Researchers report epigenetic modifications in the DNA of sperm in men who had higher phthalate levels.

Source: UMass Amherst.

Early results from a larger, ongoing study led by environmental health scientist Richard Pilsner at the University of Massachusetts Amherst suggest that phthalate levels in expectant fathers have an effect on couples’ reproductive success via epigenetic modifications of sperm DNA.

Details appear in the current issue of Human Reproduction, a monthly journal of the European Society of Human Reproduction and Embryology published by Oxford Journals.

Phthalates are compounds found in plastics and personal care products such as shaving cream, and are estimated to be detectable in nearly 100 percent of the U.S. population. Exposure is known to disrupt some hormones and is associated in human studies with changes in such male reproductive measures as semen quality and androgen levels, Pilsner says.

The authors believe theirs is among the first human studies to investigate the influence of phthalate exposure on sperm epigenetics, embryo development and whether DNA methylation in sperm cells may be a path by which a father’s environmental exposure influences these endpoints. DNA methylation, one mechanism of epigenetics, is a chemical tag on DNA that does not change the gene sequence but is involved in controlling gene expression.

Pilsner explains, “There has always been this heavy concern in the past with expectant moms not smoking and not drinking, for example, to protect the fetus. In this study, we see that dad’s environmental health contributes to reproductive success. For sperm to mature is a 72-day process, almost three months, and our study shows that this preconception time-period may represent an important developmental window by which environmental exposures may influence sperm epigenetics, and in turn, early life development. So in the same way mom needs to be careful, dad also needs to.”

Their new findings are from the first 48 couples in a study they hope will eventually reach 250. Pilsner’s research team includes Ph.D. student and first author Haotian “Howie” Wu, Dr. Cynthia Sites, director of the in vitro fertilization (IVF) clinic at Baystate Medical Center in nearby Springfield, and others at Wayne State University in Detroit. The work was supported by the National Institutes of Health.

The researchers recruited couples at the IVF clinic and took a single urine sample from the men on the same day they donated sperm. They measured 17 metabolites from 8 different phthalate parent compounds in that sample, then performed DNA methylation analyses on sperm cells to examine statistical associations.

Wu, who performed many of the analyses, explains that after receiving sperm cells from the IVF clinic, DNA was extracted and analyzed on a genomics system that examines approximately 485,000 sites for DNA methylation.

They identified 6,479 regions of interest in assessing a possible correlation between phthalate metabolite exposure and DNA methylation. Wu says, “Rather than looking for methylation changes at individual sites on the DNA, we looked at DNA regions or clusters on genes that might be more biologically meaningful than individual sites. It’s not just numbers we were interested in. We wanted to pay attention not only to the statistical relationships, but also the biology.”

Of the 6,479 regions examined, 131 were associated with at least one of the phthalate metabolites, he reports. Further, the researchers say that most of the phthalates that were associated with sperm DNA methylation were known or suspected to be anti-androgenic compounds, which means they can influence hormones.

He says, “The next step, after identifying associated regions, is to try to determine the possible biological meaning. We examined the biological pathways, or common links between genes, that might be affected in these 131 regions that were identified.” They found many of the 131 regions were related to genes involved in growth and development and cellular function and maintenance.

The authors were also interested to see if these phthalate-associated changes in sperm DNA methylation could affect early-life development. They found that some sperm DNA methylation regions were also associated with poor blastocyst stage of embryo quality as defined by the IVF clinic’s standards related to embryo quality before transfer into the uterus of the female partner to establish a pregnancy, Pilsner says.

The researchers stress that these early results represent a small sample, and note that it is unclear from this study if these methylated changes are inherited and persist during prenatal and postnatal development. Wu adds, “We are finding interesting things and raising interesting questions, and we will certainly want to explore further.

Pilsner has recently received a multi-million dollar grant to replicate and validate the findings with a dose-dependent experiment in mice. He adds, “It doesn’t surprise me that sperm carry some sort of environmental legacy to the next generation. What the sperm cell encounters during its development can influence these chemical tags or DNA methylated, and it may well have an effect on the developing embryo and offspring.”

About this neuroscience research article

Funding: This study was funded by the NIH.

Source: Janet Lathrop – UMass Amherst
Image Source: image is adapted from the UMass Amherst news release.
Original Research: Abstract for “Preconception urinary phthalate concentrations and sperm DNA methylation profiles among men undergoing IVF treatment: a cross-sectional study” by Haotian Wu, Molly S. Estill, Alexander Shershebnev, Alexander Suvorov, Stephen A. Krawetz, Brian W. Whitcomb, Holly Dinnie, Tayyab Rahil, Cynthia K. Sites, and J. Richard Pilsner in Human Reproduction. Published online Septermber 12 2017 doi:10.1093/humrep/dex283

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UMass Amherst “Father’s Environmental Exposure Affects Sperm Epigenetics.” NeuroscienceNews. NeuroscienceNews, 12 September 2017.

UMass Amherst (2017, September 12). Father’s Environmental Exposure Affects Sperm Epigenetics. NeuroscienceNews. Retrieved September 12, 2017 from

UMass Amherst “Father’s Environmental Exposure Affects Sperm Epigenetics.” (accessed September 12, 2017).


Preconception urinary phthalate concentrations and sperm DNA methylation profiles among men undergoing IVF treatment: a cross-sectional study

Are preconception phthalate and phthalate replacements associated with sperm differentially methylated regions (DMRs) among men undergoing IVF?

Ten phthalate metabolites were associated with 131 sperm DMRs that were enriched in genes related to growth and development, cell movement and cytoskeleton structure.

Several phthalate compounds and their metabolites are known endocrine disrupting compounds and are pervasive environmental contaminants. Rodent studies report that prenatal phthalate exposures induce sperm DMRs, but the influence of preconception phthalate exposure on sperm DNA methylation in humans is unknown.

An exploratory cross-sectional study with 48 male participants from the Sperm Environmental Epigenetics and Development Study (SEEDS).

The first 48 couples provided a spot urine sample on the same day as semen sample procurement. Sperm DNA methylation was assessed with the HumanMethylation 450 K array. Seventeen urinary phthalate and 1,2-Cyclohexane dicarboxylic acid diisononyl ester (DINCH) metabolite concentrations were measured from spot urine samples. The A-clust algorithm was employed to identify co-regulated regions. DMRs associated with urinary metabolite concentrations were identified via linear models, corrected for false discovery rate (FDR).

Adjusting for age, BMI, and current smoking, 131 DMRs were associated with at least one urinary metabolite. Most sperm DMRs were associated with anti-androgenic metabolites, including mono(2-ethylhexyl) phthalate (MEHP, n = 83), mono(2-ethyl-5-oxohexyl) phthalate (MEOHP, n = 16), mono-n-butyl phthalate (MBP, n = 22) and cyclohexane-1,2-dicarboxylic acid-monocarboxy isooctyl (MCOCH, n = 7). The DMRs were enriched in lincRNAs as well as in regions near coding regions. Functional analyses of DMRs revealed enrichment of genes related to growth and development as well as cellular function and maintenance. Finally, 13% of sperm DMRs were inversely associated with high quality blastocyst-stage embryos after IVF.

Our modest sample size only included 48 males and additional larger studies are necessary to confirm our observed results. Non-differential misclassification of exposure is also a concern given the single spot urine collection.

To our knowledge, this is the first study to report that preconception urinary phthalate metabolite concentrations are associated with sperm DNA methylation in humans. These results suggest that paternal adult environmental conditions may influence epigenetic reprogramming during spermatogenesis, and in turn, influence early-life development.

This work was supported by grant K22-ES023085 from the National Institute of Environmental Health Sciences. The authors declare no competing interests.

“Preconception urinary phthalate concentrations and sperm DNA methylation profiles among men undergoing IVF treatment: a cross-sectional study” by Haotian Wu, Molly S. Estill, Alexander Shershebnev, Alexander Suvorov, Stephen A. Krawetz, Brian W. Whitcomb, Holly Dinnie, Tayyab Rahil, Cynthia K. Sites, and J. Richard Pilsner in Human Reproduction. Published online Septermber 12 2017 doi:10.1093/humrep/dex283

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